Development of predictive models for the dynamics of amorphous systems by graph neural networks and generative models
Hayato Shiba (Graduate School of Information Science, University of Hyogo)

Glass dynamics Graph neural networks Molecular dynamics simulations

Abstract

  • Glasses are materials that solidify while maintaining a disordered, amorphous structure. Machine learning methods have steadily improved our ability to infer and predict their dynamics.
  • In this study, we achieved state-of-the-art predictive performance for glass dynamics using Graph Neural Networks. We also conducted international joint research with developers of other machine-learning models, using our dataset to compare predictive accuracy and physical properties.

Key Achievements

  • Developed and released a Graph Neural Network (GNN) model that predicts particle mobility, i.e., expected particle displacements, in glasses. Its predictive capability was dramatically improved by modifying the message-passing mechanism so that the model learns multiple complementary dynamic quantities simultaneously.
  • Constructed and publicly released a comprehensive dataset of molecular dynamics (MD) simulation trajectories to meet the large data requirements of GNN training.
  • Conducted an international collaboration to benchmark emerging machine-learning models for the dynamics of glass formers. This collaboration resulted. in a Technical Review published in Nature Reviews Physics in January 2025 and the release of GlassBench, a curated evaluation dataset designed to support future benchmarking efforts